Using autodock tools and vina for flexible docking. This error appears whenever a residue is chosen to be made flexible.
File “C:\Program Files (x86)\MGLTools-1.5.7\lib\site-packages\PyBabel\bo.py”, line 365, in connect_the_dots
self.connect_the_dots(self.atoms.index(new_atm), choice_bnd )
File “C:\Program Files (x86)\MGLTools-1.5.7\lib\UserList.py”, line 81, in index
def index(self, item, *args): return self.data.index(item, *args)
MemoryError: Stack overflow
Does anyone know how to troubleshoot this? Thank you.